PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC4817_p2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 330aa    MW: 37136 Da    PI: 4.7839
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC4817_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-1877127155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 + ++GVr++  +g+WvAeIr+p   ++r r +lg+f tae+Aa a+++a+++++g
  RrC4817_p2  77 CSFRGVRQRI-WGKWVAEIREP---NRRSRLWLGTFPTAEQAACAYDEAARAMYG 127
                 579****998.**********8...335************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.3E-1377127IPR001471AP2/ERF domain
CDDcd000181.53E-3077137No hitNo description
PROSITE profilePS5103222.02378135IPR001471AP2/ERF domain
SMARTSM003802.0E-3878141IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-3278137IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2179137IPR016177DNA-binding domain
PRINTSPR003672.3E-97990IPR001471AP2/ERF domain
PRINTSPR003672.3E-9101117IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010224Biological Processresponse to UV-B
GO:0010286Biological Processheat acclimation
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MAVYAHSGDV NCRQLDTSRK IKSRSRRDGT TVAERLQVWK DYNENVEEAS AKKQKVPAKG  60
SKKGCMKGKG GPENGRCSFR GVRQRIWGKW VAEIREPNRR SRLWLGTFPT AEQAACAYDE  120
AARAMYGPMA RLNFPQSSVS DVACSSSHSE VCTAPGLVHV KTEDADCESK SFGEASPKNG  180
AYTYEEEVKK GVSVSHKDWL SEFEQEYWSQ VLGEKEKQKE QVETRQKQPG SLSVSDYGWP  240
DDLDQSHWDS SELFDVSELL GDLNGDIFKD LNQSQCSGDN MTGGLSEPEK QQIGLYPLQS  300
LDSSYVLPPF QLDSEDDNDF FDLSFWEFEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1679135360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009130881.11e-167PREDICTED: dehydration-responsive element-binding protein 2A-like
SwissprotO821321e-138DRE2A_ARATH; Dehydration-responsive element-binding protein 2A
TrEMBLM4CNR41e-167M4CNR4_BRARP; Uncharacterized protein
STRINGBra005852.1-P1e-166(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28741765
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.11e-123DRE-binding protein 2A